Freelance Bioinformatics

Clear multi-omics insights for better research decisions

I work with biotech, pharma, and academic research teams across the full lifecycle of multi-omics projects, turning complex datasets into clear conclusions that guide next steps.

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Portrait of Malte Borggrewe

I'm a Hamburg-based bioinformatician & biomedical scientist with a background in neuroimmunology and experience leading projects and teams across discovery and translational research.

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When teams bring me in

Complex data, unclear meaning

When omics experiments generate many signals but it is unclear which findings are biologically relevant or how results should guide next steps.

Dedicated bioinformatics expertise

When teams need specialised bioinformatics expertise or leadership to guide multi-omics analysis and interpretation.

Data-driven decision making

When omics results inform target prioritisation, experimental strategy, or further project direction and require careful interpretation.

How I help

Structured scientific collaboration aligned with key research decisions, delivery timelines, and team capacity.

Omics analysis and biological interpretation

Leading the analysis and biological interpretation of complex omics datasets, turning results into clear conclusions and informing next steps.

Multi-omics integration and systems-level insight

Combining datasets across modalities to uncover regulatory relationships and systems-level biological mechanisms.

Clear communication and decision-oriented reporting

Presenting results in a way that enables clear decisions such as target prioritisation, experimental design, or project direction.

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Testimonials

What collaborators and clients say about working with me.

"Malte performed analyses of RNA-Seq datasets for us in 2025 and it was a pleasure working with him. The project processed quickly from the first discussion of the project, through the implementation, to the final discussion of the results. Malte answered all our questions, explained all concepts, suggested valuable additional analyses and was quickly available (in virtual meetings as well as in emails) to answer any follow-up questions. We will definitely reach out to him in the future, if we are ever in need of a bioanalysis of complex datasets."

Dr. Benedikt Brommer

Senior Scientist, AudioCure Pharma GmbH, Germany

"... Malte's expertise in bioinformatics and his background in biomedical science were crucial to our project's success. He efficiently analysed our datasets and provided accurate and meaningful insights. He also consistently sought ways to optimize the analysis and met all deadlines. Malte is also an excellent communicator, explaining complex concepts clearly and his patience and collaborative approach made the process smooth and very efficient ..."

Prof. Peter Heeringa

Professor of Immunology, University Medical Center Groningen, The Netherlands

Selected projects

Examples of recent work across discovery and translational research.

  • Target identification Transcriptomics Bulk
    Early stage target discovery support

    Confidential pharma client · 2025

    • End-to-end bulk RNA-seq analysis in early discovery
    • Transcriptomic and pathway interpretation to prioritise candidate targets
  • Drug discovery Transcriptomics Bulk
    Oncology vaccine candidate evaluation

    Confidential biotech client · 2025

    • Transcriptomic analysis of immune responses to candidate vaccines
    • Integration of expression data with treatment response signals
  • Translational research Multi-omics Multi-layer
    Multi-omics immune atlas development

    Leibniz Institute of Virology · 2022–2024

    • Integration of single-cell, spatial transcriptomics, VDJ repertoire and cytometry data
    • Generated systems-level characterisation of developmental immune trajectories
  • Software Proteomics Single cell
    High-dimensional cytometry analysis framework

    University Medical Center Hamburg-Eppendorf · 2023–2024

    • Reproducible R workflow for high-dimensional cytometry datasets
    • Machine learning based aggregate identification
  • Translational research Multi-omics Single cell
    Multi-omics profiling of microglia development

    University Medical Center Groningen · 2019–2020

    • Integrated RNA-seq and ATAC-seq to study microglia development
    • First author publication in Science
  • More about my expertise →

Some industry work is confidential and cannot be shared publicly.

FAQ

Answers to common questions about scope, process, timelines, and collaboration format.

Who do you typically work with?

I work with teams in biotech, pharma, and academia that need clear choices from complex omics data.

Do you only work on large projects?

No. I also run short engagements focused on one decision, dataset, or programme milestone.

Can you work with existing team pipelines?

Yes. I can analyse within your current stack and improve only what is needed for better outputs.

What pricing options are available?

Depending on the collaboration, I offer fixed-price or hourly rate options. Please contact me for a tailored quote.

Do you support confidential industry projects?

Yes. I frequently support confidential projects and confidentiality expectations and boundaries are agreed at project start.

Do you take ownership or work as part of a team?

Both. I can take ownership of defined analyses or work closely embedded with experimental, computational, or product teams.

How quickly can we start?

Usually within one to two weeks, depending on current commitments and project scope.

Contact

Share your project context and I will reply with a practical next step.

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